Create itol.hub Object — create_hub • itol.toolkit

create a new object for itol.hub

Usage

create_hub(
  tree,
  field_tree = NULL,
  seq = NULL,
  abundance = NULL,
  taxonomy = NULL,
  node_data = NULL,
  tip_data = NULL
)

Arguments

tree: tree file
field_tree: phylogenetic tree for field data
seq: sequence data object
abundance: abundance data object
taxonomy: taxonomy data object
node_data: node-level metadata object
tip_data: tip-level metadata object

Value

Returns a itol.hub object

Examples

TREE <- system.file("extdata", "tree_of_itol_templates.tree", package = "itol.toolkit")
create_hub(tree = TREE)
#> An object of class "itol.hub" from package itol.toolkit
#> Main tree:  23  tips
#> Feild tree:  0  trees
#> Sequence:  0  datasets
#> Abundance:  0  datasets
#> Taxonomy:  0  levels
#> Node data:  0  datasets
#> Tip data:  0  datasets
#> Themes:  0