write_unit.RdWrite itol.unit object into template file. This function will using the type information in unit object to decide different output methods for the template formats.
write_unit(unit, file = getwd())unit object. The unit object holds the data and theme of a single dataset. This is the smallest data operation unit. At this level, individual data can be fine-tuned. It is also possible to extract the style of a unit for use in other units. It is also possible to use many units to learn a complete itol.hub object. Almost all specific data operations behind the itol.toolkit package are performed at the unit level. Because itol.hub objects have comprehensive information, but to ensure that the correspondence with phylogenetic branches or nodes remains consistent when different data types are saved, many complex data aggregations are saved, which does not facilitate data processing. Therefore, in the actual data processing process, unit objects are generated from the itol.hub object and then processed.
output file path. Define the output file location and file name using absolute or relative path.
No return value, only output a template file
tree <- system.file("extdata",
"tree_of_itol_templates.tree",
package = "itol.toolkit")
data("template_groups")
df_group <- data.frame(id = unique(template_groups$group),
data = unique(template_groups$group))
## create unit
unit <- create_unit(data = df_group,
key = "Quickstart",
type = "DATASET_COLORSTRIP",
tree = tree)
#> Using default color pattern: table2itol
## write unit
write_unit(unit,tempfile())