Function reference • itol.toolkit

All functions
`color_distance()`	Color distance
`complex_html_text()`	Complex HTML text
`convert_01()`	Convert character data to 0/1
`convert_01_to_connect()`	Convert 0/1 data to connection pairs
`convert_range_to_node()`	Convert range to node id
`correct_get_color()`	correct_get_color
`count_to_tree()`	Calculate tree based on count matrix
`create_hub()`	Create itol.hub Object
`create_theme()`	Create itol.theme Object
`create_unit()`	Create itol.unit
`df_merge()`	Merge two data frame
`df_tree()`	Data frame tree
`fa_read()`	Read fasta file
`fa_write()`	Write fasta file
`file_get_dir()`	Get file dir
`file_get_name()`	Get file name
`file_to_unit()`	Create itol.unit Object from file
`get_color()`	get_color
`gradient_color()`	Generate gradient colors
`head_line()`	head line
`hub_to_unit()`	Create itol.unit Object from object
`inbuilt_themes`	inbuilt themes
`itol.hub-class` `itol.hub`	The itol.hub Class
`itol.theme-class` `itol.theme`	The itol.theme Class
`itol.unit-class` `itol.unit`	The itol.unit Class
`learn_data()`	Learn data from template file
`learn_data_from_file()`	Learn object data from file
`learn_data_from_files()`	Learn object data from files
`learn_data_from_unit()`	Learn object data from unit
`learn_data_from_unit_list()`	Learn object data from units
`learn_df()`	Learn from tree
`learn_field()`	Learn field
`learn_legend()`	Learn legend
`learn_line()`	Learn paramter
`learn_profile()`	Learn profile
`learn_separator()`	Learn separator
`learn_subdf()`	Learn sub data frame
`learn_theme_align()`	Learn align
`learn_theme_alignment()`	Learn alignment
`learn_theme_bar()`	Learn bar
`learn_theme_basic_plot()`	Learn basic plot
`learn_theme_basic_theme()`	Learn basic theme
`learn_theme_binary()`	Learn binary
`learn_theme_border()`	Learn border
`learn_theme_common_themes()`	Learn common themes
`learn_theme_connection()`	Learn connection
`learn_theme_domain()`	Learn domain
`learn_theme_externalshape()`	Learn externalshape
`learn_theme_heatmap()`	Learn heatmap
`learn_theme_image()`	Learn image
`learn_theme_label()`	Learn label
`learn_theme_linechart()`	Learn linechart
`learn_theme_piechart()`	Learn piechart
`learn_theme_specific_themes()`	Learn specific themes
`learn_theme_strip_label()`	Learn strip label
`learn_type()`	Learn template type
`line_clean()`	Filter out comments and empty lines
`line_split()`	Split lines into two parts
`merge_unit()`	Merge units
`+`(<itol.hub>,<itol.unit>) `+`(<itol.unit>,<itol.unit>)	plus method add method for S4 class itol.hub and itol.unit
`search_tree_file()`	Search tree file
`show(<itol.hub>)`	show method for S4 class itol.hub
`sort_color()`	Sort colors
`template_groups`	template groups
`template_parameters_count`	template parameters count
`train_theme()`	Train inbuilt theme
`unite_rows()`	Paste rows
`use.theme()`	Extract theme from inbuilt_themes
`vector_tree()`	Vector tree
`write_hub()`	Write all data object into files
`write_raw()`	Write raw data into files
`write_unit()`	Write unit object into file

Reference

All functions